rs226794865 SNP Detail

Summary

• ID
  rs226794865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49677661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAATCA GAGAGCTTTC
  ATATTGAGCC AGATACAAAT CTGTTATAAA ATGCTACTGA TTCAGACCAT GGACAGTGAA
  TCTTGTTTGT CTGAAGAGTG AAAAGTCTAA GCCATATATT ATGTTTTTTT TTAAGCCTAA
  TTCTCAAGTA GACTAAAAAG CAAAATTATT AGAATTGTAG TTTTGGTGAT AGGAATTGTG
  K
  TAGGCCTTTG TTAGCGATAA TTATGATCAC ATTCATTAAT GCTCATTTTG TACAATGTTA
  GTACATTTGG TTCTATAAGG AGTTGCAAAA TTCAGAACTT TCACTATTTT TATTGTGTTT
  GCTATTGACT AGGAAAGAAA AACAAACCCA AAATACAGGC ATTATGGTTT GGGGTCGTTA
  GATGTTTGTA AATCAGCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238770	MGP_WTSI_16_49857411	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226794865					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238770	MGP_WTSI_16_49857411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49677661 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	1076 bp distal
Gm56621	predicted gene, 56621	1999 bp downstream
Gm60685	predicted gene, 60685	290 bp downstream
Rr370104	regulatory region 370104	1145 bp downstream
Rr516742	regulatory region 516742	1922 bp distal
Rr516743	regulatory region 516743	1808 bp distal
Rr516744	regulatory region 516744	1051 bp distal
Rr516745	regulatory region 516745	1116 bp distal
Tssr4901	transcription start site region 4901	1911 bp downstream
Tssr4902	transcription start site region 4902	1801 bp downstream
Tssr4903	transcription start site region 4903	1492 bp downstream
Tssr138728	transcription start site region 138728	1938 bp downstream
Tssr138729	transcription start site region 138729	1576 bp downstream
Tssr138730	transcription start site region 138730	1542 bp downstream
Tssr138731	transcription start site region 138731	1186 bp downstream
Tssr138732	transcription start site region 138732	1048 bp downstream
Tssr138733	transcription start site region 138733	967 bp downstream
Tssr138734	transcription start site region 138734	729 bp downstream
Tssr138735	transcription start site region 138735	679 bp downstream
Tssr138736	transcription start site region 138736	582 bp upstream
Tssr141348	transcription start site region 141348	1986 bp upstream
Tssr141349	transcription start site region 141349	1726 bp upstream
Tssr141350	transcription start site region 141350	1455 bp upstream
Tssr141351	transcription start site region 141351	1170 bp upstream
Tssr141352	transcription start site region 141352	918 bp upstream