rs226798401 SNP Detail

Summary

• ID
  rs226798401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45353694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATGCCC TCTGCCTACT
  GTTACTTGCC AAGATGGTAC GGTCCAGGTC ACCTGTTTAC AAATGGTATG ACCCTACTTA
  GAGCTGTAGT CTTTCTGCTA TTCCCTTTCT GAGAATCAGC GTGGTACAAT CCCTCTGTCT
  TTCTTACTGC CACTGTGGCT CGGCCCCGGG AAATCGGTTA GTTTCTTGTC TGGTTTCTCA
  R
  CATGGTACAG CCCAGAAGAC CATATCCTCT CCATGTACCT TTATGCAAAC CAGCCTATTC
  TGCACGTCCC ATGTGGCCTT CTTCCCTCCC TACATGGTCT GGTCCAGGAG CTGATCATTC
  CCCCAACTTG GTATATTCCA TTCCCCCTTA GCAGCCTGAC TAGTAGAGTC CTATGTGCTC
  AGCTCCCACA CCCCTCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371182915	MGP_WTSI_7_52959640	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226798401					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371182915	MGP_WTSI_7_52959640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45353694 () rs orientation: forward

Symbol	Name	Function Class
Car11	carbonic anhydrase 11	within coordinates
Cpgi19081	CpG island 19081	256 bp proximal
Dbp	D site albumin promoter binding protein	964 bp upstream
Rr400318	regulatory region 400318	444 bp upstream
Tssr66612	transcription start site region 66612	915 bp upstream
Tssr66613	transcription start site region 66613	1023 bp upstream
Tssr66614	transcription start site region 66614	1060 bp upstream
Tssr66615	transcription start site region 66615	1090 bp upstream
Tssr66616	transcription start site region 66616	1140 bp upstream
Tssr66617	transcription start site region 66617	1174 bp upstream
Tssr66618	transcription start site region 66618	1248 bp upstream
Tssr66619	transcription start site region 66619	1921 bp upstream
Tssr66620	transcription start site region 66620	1960 bp upstream