rs226813700 SNP Detail

Summary

• ID
  rs226813700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24657228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTGCGCG GCCGCGCCTT
  CTGGCCTCGG CTCCGGGCCT CATGCGCTAG ACCGGCGCCG CGCGCTTAGT AGTTAGGGTT
  CCGCCAGCCC CGCGCGCCTG GTCGCTGCCG CCGCCGCCGC CGCCGCGCCG CCCCAGGCCC
  TGGCTGGGCC CGCTTCGGGG CCCGCGCCTC CGGAGCCATG AACTTCCAGG CAGGCGGGGG
  Y
  CAGAGTCCTC AGCAGCAGCA GAGCCTGGCG GCTCCGGGGA CCGGCGGCGG CGGCGGCGGC
  GGCGCGGGGG GCGGCGGGCA GTTCGGCGGC GCGGGGCCCG GAGCCGGGGG TGGCGGCCCC
  TCGCAGCAGC TGGCTGGCGG CCCCCCCCAG CAGTTCGCGC TCTCCAACTC GGCCGCTATC
  CGAGCCGAGA TCCAACGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364289755	MGP_WTSI_5_23958048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226813700					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364289755	MGP_WTSI_5_23958048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24657228 () rs orientation: forward

Symbol	Name	Function Class
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	within coordinates
Cpgi15603	CpG island 15603	within coordinates
Gm10472	predicted gene 10472	521 bp upstream
Rr608324	regulatory region 608324	13 bp distal
Rr608325	regulatory region 608325	863 bp proximal
Rr608326	regulatory region 608326	1334 bp proximal
Tssr45426	transcription start site region 45426	261 bp downstream
Tssr45427	transcription start site region 45427	240 bp downstream
Tssr50327	transcription start site region 50327	484 bp upstream