rs226816562 SNP Detail

Summary

• ID
  rs226816562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28425883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCAGCC GGGGGGCCTT
  GAAACCACAG GTCCCACTCT CCCTTCTCCC CTCAGCTGCA GGAGGATGAG CTCCGGGATG
  CGGTGCTGCT GGTGTTTGCC AACAAGCAGG ACATGCCCAA TGCCATGCCC GTGAGCGAGC
  TGACTGACAA GCTGGGCCTT CAGCACCTGC GTAGCCGCAC GGTAAGGCTC ACGTCCCCTC
  K
  GCACTGGGCC CCGTGCTCTC CTGGGCCCGC TGGACAGAGA AGAAAGAGAG GGGTTGTCTA
  TGCTAAAGAG AAATAGCATC TTGTGTTACT TGTTCTTTTG TTTTCTGTTG GAATTTTTGT
  CATCTTTGCT TAGCACAAGG AAGAGTTCTC TTCCCTGAGA CTGATCTCCT TCTCTCTGTC
  CCTACAGTGG TACGTCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367792793	MGP_WTSI_6_28375884	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226816562					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367792793	MGP_WTSI_6_28375884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28425883 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	within coordinates
Cpgi17216	CpG island 17216	1551 bp distal
Gcc1	golgi coiled coil 1	1731 bp upstream
Rr627383	regulatory region 627383	1732 bp distal
Rr627384	regulatory region 627384	1315 bp proximal
Tssr55191	transcription start site region 55191	1535 bp downstream
Tssr55192	transcription start site region 55192	1295 bp downstream
Tssr55193	transcription start site region 55193	349 bp upstream
Tssr55194	transcription start site region 55194	410 bp upstream
Tssr55195	transcription start site region 55195	459 bp upstream
Tssr55196	transcription start site region 55196	495 bp upstream
Tssr55197	transcription start site region 55197	608 bp upstream
Tssr55198	transcription start site region 55198	1998 bp upstream