rs226822678 SNP Detail

Summary

• ID
  rs226822678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149325335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAAATGTC ATCTTATGTT TCAGTGATTT
  TATGGATATC AAACTCATCT GTATGCTATT TCTAATAGCA GTTTTATGAC CAAACTAATA
  AATATAGGAA ACTGTTCTGA TTTTAATAAT ACATGGTTTC TTATGGTGGT AGTTTATTTT
  K
  GCTAATGTAA AATGATAAAT CTGAAGGCTA AGGTTAAAGT CTTGAAAATA ATTTAAAATA
  CAGAATGAAA TCCTTGTCCT AGATCTTCCT AAAGTCATTA TTGCATTTTT TGAAAGTATA
  CTTTGGGGGC TTCTTTTCCA CTTCAAAGTT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320039549	CHEV_1_151296717	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226822678					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149325335 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	355 bp downstream
Tssr14117	transcription start site region 14117	376 bp downstream