rs226828117 SNP Detail

Summary

• ID
  rs226828117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36074112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAAGCA CTAGGATTAA
  AGGTGTGTGC CACCATCGCC CTCCTCCTCC TCCTCTTCCT CGATATCTTT GTCTCTCTGT
  CTCTGTCTCT CTCTCTTTCC CTCTGTGTGT GTGCCATGTG TGTGGGTGCC TGTAGAGGCC
  AGAAGGGAGC ACCCAATCCC TTGCAACGAT TCTCCCAGGA AGTCTTGGCA CCTGACATGA
  Y
  GTTTTGGGAT TAATGATCTC TGGTCCTCTG GAAAAGCACC AAGGGCTTTT TTTCTCCTTC
  TTTTTGTTTG TTCCTTTGTT TTTGAGACTC CCACTGTGTA ACCCTGGCTG GCCAGAAATT
  CACTTTGTAG ACCAGGCTGG CCTTAAACTC ACAGAGATCC CATCCTCCAG CCTCTGGCTT
  CCGAGTAGCT CCGTTGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584116	CHEV_18_36100713	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226828117					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36074112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9858	CpG island 9858	1083 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	1694 bp distal
Rr536028	regulatory region 536028	1402 bp distal
Rr536029	regulatory region 536029	1181 bp distal
Rr536030	regulatory region 536030	642 bp distal
Rr536031	regulatory region 536031	849 bp proximal
Rr536032	regulatory region 536032	878 bp proximal
Rr536033	regulatory region 536033	1350 bp proximal
Tssr150585	transcription start site region 150585	1310 bp upstream