rs226837515 SNP Detail

Summary

• ID
  rs226837515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130551050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCATCCT GATGCTTCTG CTACATCGTA
  GGCCACTGTC ATTGTCACCA GTGGCGACCA CACCACCTTC CTCCCAATCT ATTCTCTTTA
  CACACATTGG TCCTGCATCT GGCTCCTCTA ACCATCCAGG TCACTGAGGA AGGCAGGACC
  R
  AGTTGTAGGC ATCAGCCCAT ATTGGGTCCC CCAGAGTCAC TCTATTCCAC TTGGTCCCCA
  CCATGACACC TATACCAGCC ACACTGATGC TGATCCCAGC TGACGTCAGT CACAAGCCCA
  CACAGTTAAT GCAGGCTCTC CCTCCCCCAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318868	CHEV_4_130379654	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226837515					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130551050 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	655 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	1538 bp downstream
Tssr39280	transcription start site region 39280	1071 bp downstream
Tssr39281	transcription start site region 39281	1013 bp downstream
Tssr39282	transcription start site region 39282	692 bp downstream
Tssr39283	transcription start site region 39283	612 bp downstream
Tssr39284	transcription start site region 39284	404 bp downstream
Tssr39285	transcription start site region 39285	340 bp downstream
Tssr39286	transcription start site region 39286	273 bp downstream
Tssr39287	transcription start site region 39287	259 bp downstream
Tssr39288	transcription start site region 39288	215 bp downstream
Tssr39289	transcription start site region 39289	94 bp downstream
Tssr39290	transcription start site region 39290	87 bp downstream
Tssr39291	transcription start site region 39291	56 bp upstream
Tssr39292	transcription start site region 39292	133 bp upstream