rs226843680 SNP Detail

Summary

• ID
  rs226843680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40990560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAAGCCA CTGTGTGAGG
  AAGCTCTATT TTTTTCCTTC TGTCACTGCA TCTCTTAAAG CCTGCAGCAA ATCTCCAAGC
  TCTCAGTTTT GCAGGGAATT AGCATCCCAT CCTAATTTCA AAGCCGAGGC TGTGTGTTCC
  CATGGAGTGT GTCTGTCACA CACTGTTCTG TCTCCTTACC TGCTTGGTGT CACGACAGGT
  M
  GACCACTATT ATGTCAGAGG CTCAGCACAT TCTTCTAGCT CACTATCATC ATCCCCGCTG
  CACAAGCGAG GAAATTGAGG CTCAGAAGGG GAAACGGTAT GTGCACAAGG CAGTATATGA
  ATCTTAAGTG GCAGACCCAC GATTTGAACT TAGGGCTTCT GAGGATAGAA GTGTGTCTTC
  AGCGGCACAC CCTAAGCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss377329582	MGP_WTSI_9_40887347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs226843680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377329582	MGP_WTSI_9_40887347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40990560 () rs orientation: forward

Symbol	Name	Function Class
Rr206246	regulatory region 206246	40 bp proximal
Ubash3b	ubiquitin associated and SH3 domain containing, B	within coordinates