rs226845818 SNP Detail

Summary

• ID
  rs226845818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTAAAGTA ACCAAGGACC AGTCCCTTCA
  GGGTCCCTGG GTGGAGGGAG ATTGAAGTTT CTTCTTGCGG ATTGGCCGGC GTGAGAAATG
  CCTCGTCTAA CACCACAAGA TTTGAAATAG CCACGAGAGG ATGGATAGAG AGATGTCCAA
  Y
  TCCAGGAAGC GTGAAACCCG GGAACTTCAG AGTTCCAGGT CCCCCGAGTT GGCTGGCGGA
  GGGTGAAGTT CATTTTTTCC GTTTCTCACC ACCCCTTTCC CAGCCTCCGG TCTCTAGTCT
  GAGTAAGAAG GGACCGGCGA GCGGACCCCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169570	CHEV_1_186634514	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226845818					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	26 bp proximal
Gm70890	predicted gene, 70890	1289 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	552 bp proximal
Rr425291	regulatory region 425291	1300 bp proximal
Rr425292	regulatory region 425292	1713 bp proximal
Rr425293	regulatory region 425293	1861 bp proximal
Tssr15650	transcription start site region 15650	345 bp downstream
Tssr15651	transcription start site region 15651	521 bp downstream
Tssr15652	transcription start site region 15652	535 bp downstream
Tssr15653	transcription start site region 15653	624 bp downstream
Tssr15654	transcription start site region 15654	651 bp downstream
Tssr15655	transcription start site region 15655	669 bp downstream