rs226847125 SNP Detail

Summary

• ID
  rs226847125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72197430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTCAGA TATTAATAAT
  TCACAAATAC TTGAAGCAGG AGAGAGCATT TTTCAATTCT TCTCGGTGGT TTGAAATAAA
  AACAAAGCAG AAGACTCCAT AAAAAACAGA TTGAATGGAA TTTTGTGATT ACAGCACGTA
  GATGCACATC AAGTTTTCAG AGCTGGGTAC AACTCACCGC GCACCATTAA TTTATAGTAC
  Y
  TTTGCTTCTG ATAATTTGAC TCAGAGTCAG GCAGTGTCTA CATTGTAAGG TTTTATCGTC
  GAATATTCCC TTTTGAAATC TTTGTCAGCA AGTACAAAAA CCATCTAGTC TTGCTTCAAG
  TCATAGTCAA ATAGACCATA CCTGAAAATT ATTTGGAAAT TTGAGTTTAA AGCAAGGAAG
  ACATAACTAT GAAATTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342099	CHEV_2_72205143	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226847125					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72197430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			718 bp distal
Rr558962	regulatory region 558962			211 bp distal