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rs226849762 SNP Detail
Summary
  • ID
    rs226849762
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:51118442 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTAACGGGCT TGGCTGCATG
    GCGGCATGGC GACAAAGCAC CAAGGATGGA CTGGTGGGAA AGGGGGGCGC GGATATGGGC
    CTTCCCCCCT TACAAGCACA GCCTCTTAGT AAACTCTCGG GCCTTGATCA GAGAAAAATT
    TGTCTTGGCT TCATCATTCT TTTTTCGCAG TCTAGTCTCT TTCAGCCCCA GCCTGCCTTC
    Y
    AGAAATACCT GGTTCATGTA GGCCGCGGGC CGGCCTCCTA CTACACACAC ACACACACCA
    AAAAACCAAA ATTAAACAAT AACTAATACC AAGAAACTAA AGATGGCTCA GCAATTAAGA
    GCACTGGATG CTCTTGCAGA GGCTGTCAGG TACCTACATG GCAGCTCACA GCTACCAGGG
    AAACCAATGT CATCATGAAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357925104 MGP_WTSI_3_51014943 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C T T C C C C T C C C C C T C C C C T C T C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226849762 SNP C C C C C C C C C C C C C C C C C C C C C T T C C C C T C C C C C T C C C C T C T C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357925104 MGP_WTSI_3_51014943 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:51118442 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr576241 regulatory region 576241 616 bp distal
Tssr29031 transcription start site region 29031 723 bp downstream
Tssr29032 transcription start site region 29032 681 bp downstream
Tssr29033 transcription start site region 29033 664 bp downstream
Tssr29034 transcription start site region 29034 647 bp downstream
Tssr33189 transcription start site region 33189 827 bp upstream
Tssr33190 transcription start site region 33190 468 bp downstream
Tssr33191 transcription start site region 33191 538 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory