rs226851269 SNP Detail

Summary

• ID
  rs226851269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84929026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGGCAT GCCAGGCGAG
  CACTCCACTC TTTGAGCTAC ATCTTTGTCT CCTGTTTAGT TGACAGAGAC AGGGTTTCTT
  GTAGTCTGGG CTAGCCTCAA ACTTGCCATG AAACTAACGG CGGACTTGAG CTCCGCATTC
  TCTTTCCTGC AACTCTCAAG TGCTAGGGTT ATGGGCATGG GCCACCAACT CCAGCTCAGG
  Y
  GGCCTTGTCT TTATGGAGAG AGTGTAGACA TTCCTGGGAT TGTCTCTGCC GCCTCAGTTT
  TTCCATCTGT GAATGGGAAC TTTTGGAGAT GCAGTGGAAC AGAGCACACT CTCTAGTCTC
  CCATAGGGTG CTGAGGTCTC CTCATATCCT GTGTTGAATG TCCTCAGTGG ACATGGAGGT
  GTGTCTTCCT AGCTGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375393408	MGP_WTSI_8_86726296	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226851269					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375393408	MGP_WTSI_8_86726296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84929026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20683	CpG island 20683	543 bp distal
Cpgi20684	CpG island 20684	1027 bp proximal
Gm37352	predicted gene, 37352	within coordinates
Gm56841	predicted gene, 56841	323 bp downstream
Gm64014	predicted gene, 64014	1654 bp upstream
Gm64130	predicted gene, 64130	732 bp upstream
Gm65345	predicted gene, 65345	within coordinates
Rr186983	regulatory region 186983	within coordinates
Tssr78372	transcription start site region 78372	1551 bp downstream
Tssr78373	transcription start site region 78373	1522 bp downstream
Tssr78374	transcription start site region 78374	1450 bp downstream
Tssr78375	transcription start site region 78375	604 bp downstream
Tssr78376	transcription start site region 78376	1891 bp upstream
Tssr82082	transcription start site region 82082	1742 bp upstream
Tssr82083	transcription start site region 82083	1647 bp upstream
Tssr82084	transcription start site region 82084	729 bp upstream
Tssr82085	transcription start site region 82085	427 bp upstream
Tssr82086	transcription start site region 82086	405 bp upstream
Tssr82087	transcription start site region 82087	380 bp upstream
Tssr82088	transcription start site region 82088	1086 bp downstream
Tssr82089	transcription start site region 82089	1124 bp downstream
Tssr82090	transcription start site region 82090	1271 bp downstream
Tssr82091	transcription start site region 82091	1712 bp downstream