rs226854957 SNP Detail

Summary

• ID
  rs226854957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89789338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATACACG CAGGCAAAAC
  ACCCATACAC ATCAAATAAA ACTTAAATAA ATCAATATGG GGGGTGCCAG CAAGATGCCT
  CACACAAGTC AGAACCCCCC CCCCCCAGCT TCTGGGGAAG GAGAGAATCC TTGTCTGGAA
  GGTCTCCCCC CCCCCCCCCA GCTTCTGGGG AAGGAGAGAA TCCTTGTCTG GAAGGTCTCC
  Y
  CCCCCCCCAG CTTCTGGGGA AGGAGAGAAT CCTTGTCTGG AAGGTCTCCC CCCCCCCCCC
  CAGCTTCTGG GGAAGGAGAG AATCCTTGTC TGGAAGGTCT CCCCCCCCCC CCCCAGCTTC
  TGGGGAAGGA GAGAATCCTT GTCTGGAAGG TCTCCCCCCC CCCCCCAGCT TCTGGGGAAG
  GAGAGAATCC TTGTCTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss358822056	MGP_WTSI_3_89685953	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs226854957					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358822056	MGP_WTSI_3_89685953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89789338 () rs orientation: forward

Symbol	Name	Function Class
Il6ra	interleukin 6 receptor, alpha	within coordinates
Rr81953	regulatory region 81953	739 bp distal
Rr81954	regulatory region 81954	244 bp proximal
Rr397798	regulatory region 397798	719 bp upstream