rs226855702 SNP Detail

Summary

• ID
  rs226855702
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116386652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTTTGG ATTAACTAAC
  AACAATATTC ATCATGTACA AAATGATCTT TTGAAATAAA TATATACTGG GTATAAGTGG
  CTAAATTGAG CTGACTAAAA TACTCATTAC TTGCATCCTT GCTCTTTTTG AAAAGTGTTG
  CCCATTTAAA TTGATTTTAA AATGCGTATT TGTCTAAAGG TGTTCAAATA TGGGGAAATG
  M
  TGGGCGTGGT GGAGCATGCT TTGAATATCA GCTCTCCAGA GGAAGGGCAG ACAGAGCCAA
  AGGCCAGCCA GGGTGACCCT CAGACCCTCT CTCAGAATAG AGTACAGGAG AAAATACGCC
  AGGAACAACA AGGCATGGCT TTAACAATTT AGAATGGGTC ATATTCACTA GCTTTGCAAC
  TTTTCTAAAT GCTAGTTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895783	CHEV_3_116295921	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226855702					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116386652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1473 bp proximal
Rr397965	regulatory region 397965	1760 bp upstream
Rr583746	regulatory region 583746	1447 bp proximal
Rr583747	regulatory region 583747	1744 bp proximal
Rr583748	regulatory region 583748	1825 bp proximal
Sass6	SAS-6 centriolar assembly protein	1979 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1956 bp upstream
Tssr35316	transcription start site region 35316	1813 bp downstream
Tssr35317	transcription start site region 35317	1845 bp downstream