rs226858105 SNP Detail

Summary

• ID
  rs226858105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC TGGAGTTTAC CCATCCTGCT
  R
  GGCTGGCTGG CCAGTCAGCC TCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044823	CHEV_6_142419968	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226858105					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417174 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640648	regulatory region 640648	1633 bp distal
Rr640649	regulatory region 640649	within coordinates
Rr640650	regulatory region 640650	1339 bp proximal
Rr640651	regulatory region 640651	1651 bp proximal
Tssr63950	transcription start site region 63950	1350 bp downstream
Tssr63951	transcription start site region 63951	1365 bp downstream
Tssr63952	transcription start site region 63952	1396 bp downstream
Tssr63953	transcription start site region 63953	1449 bp downstream
Tssr63954	transcription start site region 63954	1512 bp downstream
Tssr63955	transcription start site region 63955	1541 bp downstream
Tssr63956	transcription start site region 63956	1627 bp downstream