rs226865461 SNP Detail

Summary

• ID
  rs226865461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132239802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTGTTG GGGGCCTGAG TGAAGCCTTC
  AAGATGCTGC TCCCTCCGGA AGCCCCCTTC AGCCCTGCTG AAAAGTCACC TTGCCCCTGC
  TCCTCAACAC CTTTAACCTC CTCCTGGCTC TGCTTACCAA ACACATGGAG CTTCAGTACC
  K
  CATTTACAAG CCTTACCCCT TCCTTCCAGT TAATGGACTT TATTACCAGC CATGTGTGAA
  GACACTTCCA TTTAGAAAGG TAAAACTGAT TGTCAACCAC ACTGCATTTT TTTTTTTTTG
  ACTGCATTAA GCTGTGGAAA ACATCACTTA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333921	CHEV_4_132068406	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226865461					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132239802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1716 bp distal
Gm68741	predicted gene, 68741	470 bp downstream
Rr377206	regulatory region 377206	1422 bp downstream
Rr377207	regulatory region 377207	578 bp upstream
Tssr43679	transcription start site region 43679	2000 bp upstream
Tssr43680	transcription start site region 43680	1982 bp upstream