rs226866598 SNP Detail

Summary

• ID
  rs226866598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:69996746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAACCAA TTTCTGAAAA
  TCCATGGTCC AGAGAACTTT AAATGACCAG GTGGACAAGG CAGGGTCAGG TTGTGAGGAA
  CAGGATCAGG TTAGAGGAAA AGGTCTAGAA GTTTTGCCCC ACTCTTGAAG GCTACCTCTG
  GTTGGTCTTA GTGGGATTAA GGAGTGTGAG GTAAGGTGGA TAGACATACT CGCCTCTCCG
  R
  AGGCCTGAAG ACCAGAGGCA TCTGTCCTAG AGCTGTGCCC TAACTCAGTC AGACAGCATC
  CCAGGCCTTG AGAATCTAGT CAAAGCCAGA ACATTTAAGC TACACAATTG CAGACTCAGG
  AGCAATCGCT ATCTCTGCCA AACCAAGAAG GATGCTGGAG CACTCAGTGA TGTCACACTT
  CATTCTGCCC TTAGAACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322251014	CHEV_7_77491884	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226866598					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:69996746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19247	CpG island 19247	509 bp distal
Cpgi19248	CpG island 19248	723 bp proximal
Cpgi19249	CpG island 19249	1460 bp proximal
Gm44948	predicted gene 44948	550 bp downstream
Rr648635	regulatory region 648635	1985 bp distal
Rr648636	regulatory region 648636	within coordinates
Rr648637	regulatory region 648637	688 bp proximal
Rr648638	regulatory region 648638	1804 bp proximal