rs226868838 SNP Detail

Summary

• ID
  rs226868838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153627918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGGCTC AGCGACTCAC
  CACAAGGAAG CATTTTCTGT AGGGGTTGTT GCAGCCAAAG GAATGCCTGC TGAGAAGAGG
  AGTAGAAGGT AGGCTAGAGG AGAGCTGGCT GTGGAGGTGT TCCTTGCCTA ATCTCTCTCA
  GCCTGGGTCG GGGCAAGGAT GAAGAGGTCT GGAGGACTGG GGAGCTGGGA CTGATAGCAA
  Y
  TTGGCTGTGT CCCTGTGCTC CTAAGCGCTT CCACGGGTGC TGTCACGGTT CTTACACTGT
  TTATTTATGT CCTCTGCTTC TGGCGCAGCT CTGAACCGAG GAAGGAGAAA ATGAAAGTGA
  GCTCGGGCTT GTTTGCTGCA GGGCTCTGTT CTGGAGTGGG CTTTTCCCTC CCATATCAGA
  GTCCCCTGAT TTTCTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351980117	MGP_WTSI_1_155599302	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226868838					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351980117	MGP_WTSI_1_155599302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153627918 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	408 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	175 bp downstream
Rr420749	regulatory region 420749	1480 bp distal
Rr420750	regulatory region 420750	811 bp distal
Rr420751	regulatory region 420751	190 bp proximal
Tssr9483	transcription start site region 9483	296 bp downstream
Tssr9484	transcription start site region 9484	265 bp downstream
Tssr9485	transcription start site region 9485	172 bp downstream
Tssr9486	transcription start site region 9486	138 bp downstream
Tssr9487	transcription start site region 9487	611 bp upstream
Tssr9488	transcription start site region 9488	638 bp upstream
Tssr9489	transcription start site region 9489	680 bp upstream
Tssr9490	transcription start site region 9490	816 bp upstream