rs226885941 SNP Detail

Summary

• ID
  rs226885941
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174137363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA GCTGACCTGT CGCTGGGGTC
  K
  GAGGGGAGTG GGCTAGTGGT TGAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320627371	CHEV_2_174121071	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226885941					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174137363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	within coordinates
Cpgi12857	CpG island 12857	1369 bp proximal
Gm56458	predicted gene, 56458	378 bp downstream
Gm56459	predicted gene, 56459	109 bp downstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	134 bp upstream
Rr374311	regulatory region 374311	within coordinates
Tssr22102	transcription start site region 22102	800 bp downstream
Tssr22103	transcription start site region 22103	42 bp upstream
Tssr22104	transcription start site region 22104	1757 bp upstream
Tssr28008	transcription start site region 28008	1409 bp upstream
Tssr28009	transcription start site region 28009	128 bp upstream