rs226886295 SNP Detail

Summary

• ID
  rs226886295
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124607847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTATGT AGACCAAACT
  GGCCTAGAAC TCACAAAGAT CTGTTTGCCT CCACCTTCTG CCTCTTCTGC CTCTGCTTCT
  TCCTCTTCCT CCTCTTTTAA GGAAAGGCAG TCTAGATTTC ATTTTCTAAG CCATACAGTG
  GCTAGGTGTG GTGGCTCATA CCTGTAATTC CAGCAAGTGG TAGGCGAAAA GCAGAAAAAT
  W
  AAGAATTACA TGGAATTGGG GCTGGTGAGA TGGCTCAGTG GGTAAGAGCA CCCGACTGCT
  CTTCTGAAGG TCGGAAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA CCACCCGTAA
  TGAGATCCGA TGCCCTCTTC TGGTGTGTCT GAAGACAGCT ACAGTGTACT TTACATATAA
  TAAATAAATA AATCTTTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294517	CHEV_4_124391298	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226886295					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124607847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	476 bp proximal
Rr367691	regulatory region 367691	501 bp upstream
Rr599340	regulatory region 599340	1018 bp distal
Rr599341	regulatory region 599341	127 bp proximal
Rr599342	regulatory region 599342	268 bp proximal
Rr599343	regulatory region 599343	402 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	755 bp upstream