rs226891236 SNP Detail

Summary

• ID
  rs226891236
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:23474883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATGG GTTATTTAAT
  TGGAAGAAAG TCAAATATTA AAAGTAATAA TAATAACAGA TTAAAAAGTT ATTGTCCCTT
  GTGTATATTT TCAAATGCTC AATAAAGTCT ATGGTACTGT TTAATTAAGA ATATATGAAC
  AAAGCCCAAC AGTGAATATT TATTTCATGA TATTGTGACT TATTTTTTTC CCCAAAGCAA
  A
  AATTAAACAA AGGAGGTTTA AAAATCACTG TCAGATCCTT ACACTGGACA TGGAAACATA
  CAGAGGCGGT CATAGCCTCC TTTAAAGTTT TCTGGGTGGA ACTTCGAGAC CCCTAGTCTG
  CTATTGTAAC AGATCTCACT ATGCTGTTCC TTTGCTGAAA TTACACGAGG TATCCCCTGC
  GTTCCAGGCG ACTCTGACGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324891323	CHEV_15_23404552	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226891236					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23474883 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	mRNA-UTR
Cpgi6966	CpG island 6966	577 bp distal
Gm56739	predicted gene, 56739	62 bp downstream
Tssr130794	transcription start site region 130794	339 bp downstream