rs226892540 SNP Detail

Summary

• ID
  rs226892540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGGGGGT GTGCCCGGAG
  CTAGCTATAC CCGCCCCCAG GACTTCCAGC AGCCCCACTC TCTCCGCACA GCAGACGGGA
  AGTCACAGGT CGCTAGCGTT AGGGAAGACA GCGACCGTGG CAGAAGGGAA AAGAAGCGCG
  CTTTTGGGAA GTCACATTTG TAGTGTTCCT TCTTTTAAGA TAAAGGAAAG CTATTTGGGG
  R
  GGGGGGGGGA ACCTACCCAC ATACACGTCC ACGACAGGTT TAGCGTGAAG CTTTGCAACT
  TGGAGCAACG CGGGAGGCCT TCTCGGAAAC TCAGTGACAC GAATTGTAGG AACACTGTGC
  GGTCTCCCTC AGACCGCAGA GGAGCCCCGA GGGACCCGGT GCATTCGGAA CTCCCCCCAC
  CCCCAAGAAT GAGGCAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385325250	MGP_WTSI_12_25781453	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226892540					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385325250	MGP_WTSI_12_25781453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Cpgi4501	CpG island 4501	1743 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Id2	inhibitor of DNA binding 2	496 bp upstream
Rr403250	regulatory region 403250	225 bp downstream
Rr463954	regulatory region 463954	118 bp distal
Rr463955	regulatory region 463955	within coordinates
Rr463956	regulatory region 463956	542 bp proximal
Rr463957	regulatory region 463957	1555 bp proximal
Tssr112979	transcription start site region 112979	849 bp downstream
Tssr112980	transcription start site region 112980	139 bp downstream
Tssr112981	transcription start site region 112981	101 bp downstream
Tssr112982	transcription start site region 112982	840 bp upstream
Tssr115884	transcription start site region 115884	795 bp upstream
Tssr115885	transcription start site region 115885	492 bp upstream
Tssr115886	transcription start site region 115886	651 bp downstream