rs226892595 SNP Detail

Summary

• ID
  rs226892595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32699393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGGATA GAATCAGTGC
  TCTCTTTCTT TTTCCTCTTT CCGGGTCTCT TCTCACCACA CTGCCCCTCT TGGATATTTT
  AAAATACCTG AATACTGAAC TTGTGTTTCT TTTCTAATGG AAGGCTATCC TGGGCCTCAG
  AAGCCCAGGG ACCATACAGC TGAAGAGGGG AGCAGGTGTC CCAGTGGAAG GGCATCCTGA
  S
  ACACTGGTGC CCAGGAACCA CACAGCTCTG AAAGGAAACC TTCGCAGCTC CCAGGGGAGG
  GTATTCCCAG CTGAGCTGAG GAGCTCAAGA GTCTCAGACC TACTCCACTT GTTTGCTTCT
  CTTCATTGCT TCTTGGCTTC TTATCAGTCA CACCAGGCAG CAAATCGCAT AAAAGAGATT
  TATTGGTAGA TCCAGAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395868200	MGP_WTSI_16_32879109	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226892595					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395868200	MGP_WTSI_16_32879109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32699393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fyttd1	forty-two-three domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr404782	regulatory region 404782			908 bp downstream
Rr514843	regulatory region 514843			1268 bp distal
Rr514844	regulatory region 514844			883 bp distal
Rr514845	regulatory region 514845			352 bp distal
Rr514846	regulatory region 514846			65 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein			1272 bp upstream
Tssr138060	transcription start site region 138060			1192 bp downstream
Tssr138061	transcription start site region 138061			1160 bp downstream
Tssr138062	transcription start site region 138062			1129 bp downstream
Tssr138063	transcription start site region 138063			928 bp downstream
Tssr138064	transcription start site region 138064			902 bp downstream
Tssr140832	transcription start site region 140832			1388 bp upstream
Tssr140833	transcription start site region 140833			1349 bp upstream
Tssr140834	transcription start site region 140834			1308 bp upstream
Tssr140835	transcription start site region 140835			1281 bp upstream