rs226903008 SNP Detail

Summary

• ID
  rs226903008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC AGACTCCAGA ACTGGAGGAG
  R
  AAGAGAAAGC GCATAGCTGG GGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321754662	CHEV_6_17413589	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226903008					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	within coordinates
Rr626800	regulatory region 626800	94 bp distal
Rr626801	regulatory region 626801	51 bp distal
Rr626802	regulatory region 626802	460 bp proximal
Tssr55050	transcription start site region 55050	147 bp downstream
Tssr55051	transcription start site region 55051	8 bp downstream
Tssr55052	transcription start site region 55052	160 bp upstream
Tssr55053	transcription start site region 55053	237 bp upstream
Tssr55054	transcription start site region 55054	296 bp upstream
Tssr55055	transcription start site region 55055	312 bp upstream
Tssr55056	transcription start site region 55056	338 bp upstream
Tssr55057	transcription start site region 55057	503 bp upstream
Tssr55058	transcription start site region 55058	543 bp upstream
Tssr55059	transcription start site region 55059	582 bp upstream