rs226907320 SNP Detail

Summary

• ID
  rs226907320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13252186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAATGGG AATAAAGGCA
  CATGCCACCA TATCTAGCCC CATCTTTCTT TTAGAATACA GCAAGAAATG AACCTGAAAA
  TCCAGTTAGA GCTGCAGATT TGAGCTTCTC TGTTGACATT GGATGAAACT TAGTGCTGGC
  ATGAGCAGAA CCCCAAATTC TAGCTCCCAC AGTCGCCCAG AGTGCTTGCT GCCTCTGGGG
  R
  AAAACGTGCA GAGATCAGCT CAGCCCAGCA GTGAACAGTG TTTTAACACC AAGTGTCCTT
  GCCAGTGCTC TGACCTTGAC CTTTCCCCAG TGGTGACTCA GACCACAGAC TGGACTACAT
  TCTCTTCATA CACAACTTTC CCCTTGGTCT GACCACACAG AGCTGGAACA TTTCCTCCTC
  CATATTTCCT CCTCCTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505065	CHEV_8_13202186	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226907320					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13252186 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	396 bp downstream
Cpgi20110	CpG island 20110	752 bp distal
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	1491 bp upstream
Rr659873	regulatory region 659873	1222 bp distal
Rr659874	regulatory region 659874	703 bp distal
Rr659875	regulatory region 659875	473 bp distal
Rr659876	regulatory region 659876	within coordinates
Rr659877	regulatory region 659877	37 bp proximal
Rr659878	regulatory region 659878	1538 bp proximal
Rr659879	regulatory region 659879	1629 bp proximal
Rr659880	regulatory region 659880	1783 bp proximal
Tssr76386	transcription start site region 76386	1399 bp downstream
Tssr76387	transcription start site region 76387	1215 bp downstream
Tssr80428	transcription start site region 80428	1550 bp upstream
Tssr80429	transcription start site region 80429	758 bp upstream