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rs226928711 SNP Detail
Summary
  • ID
    rs226928711
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:158726001 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACAAGAAGC ATTGGCTAAA
    TTCTGTGTTC CTTAAAAGGG AAGCAGCCAG TTTGCCAGTG CTTATTTGGC CATGGGGCAG
    GAACAGGCCT GTGTTGCATC CTGTGGAGAC AGCAGGAGGG TTTGTGGCTA GAAGTATACT
    GGCAAAGGGT CATTATTAAA ATAGCCATCT TAGAAAATAT GTACAGAACA GAGGGACATC
    Y
    AGTTTGCTGG CCAGTTTATA CCACAGCTCC TGTGGCTGGA CAGCTCATTG GGTCTCACTG
    CCTCCTTTTG GCTCCCTGCA CAGGTACCAA TGCCATTCTC CCCTCCTTAA TGTGTGAGCA
    GCAAGCAAGT GGACAGAATG AGAAGGACAC ACACTGATTA TTAAATGTCT GGACTTGTGT
    TTTTAATATA GGGGTGACAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss405009510 MGP_WTSI_X_156380937 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226928711 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss405009510 MGP_WTSI_X_156380937 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:158726001 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr694730 regulatory region 694730 within coordinates
Sh3kbp1 SH3-domain kinase binding protein 1 within coordinates
Tssr162526 transcription start site region 162526 1293 bp downstream
Tssr162527 transcription start site region 162527 300 bp downstream
Tssr162528 transcription start site region 162528 135 bp downstream
Tssr162529 transcription start site region 162529 103 bp downstream
Tssr162530 transcription start site region 162530 86 bp downstream
Tssr162531 transcription start site region 162531 60 bp downstream
Tssr162532 transcription start site region 162532 29 bp downstream
Tssr162533 transcription start site region 162533 11 bp downstream
Tssr162534 transcription start site region 162534 within coordinates
Tssr162535 transcription start site region 162535 41 bp upstream
Tssr162536 transcription start site region 162536 86 bp upstream
Tssr162537 transcription start site region 162537 1403 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory