rs226938930 SNP Detail

Summary

• ID
  rs226938930
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57955042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TGATTCTGGG CGACTCCGAT
  T
  AGAGCCTTGG TAGCAGGCTT TTGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136097	CHEV_4_57967914	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226938930					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57955042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	474 bp proximal
Gm35344	predicted gene, 35344	1710 bp upstream
Gm57068	predicted gene, 57068	142 bp upstream
Rr398279	regulatory region 398279	1266 bp upstream
Rr592846	regulatory region 592846	1865 bp distal
Rr592847	regulatory region 592847	952 bp distal
Rr592848	regulatory region 592848	within coordinates
Rr592849	regulatory region 592849	723 bp proximal
Rr592850	regulatory region 592850	1359 bp proximal
Rr592851	regulatory region 592851	1385 bp proximal
Rr592852	regulatory region 592852	1692 bp proximal
Tssr1183	transcription start site region 1183	1269 bp downstream
Tssr1184	transcription start site region 1184	1374 bp downstream
Tssr37396	transcription start site region 37396	1580 bp upstream
Tssr37397	transcription start site region 37397	1882 bp upstream
Tssr41865	transcription start site region 41865	1509 bp upstream
Tssr41866	transcription start site region 41866	1241 bp downstream
Txn1	thioredoxin 1	Intron