rs226944641 SNP Detail

Summary

• ID
  rs226944641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153626757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGAAG CAGAGAACTG
  ACACCCAAAG TTGTCTTCTG ACCTCCATCA GCCTGCCCAA ACACACACAG CATGTAATGC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACATTCCTTC TCTGCATCAG GAGCAAGCTC TGCCCAGAGC TTTGGAATTT TGTAGTAAGC
  Y
  ACTGTAGTCC AAGCAGCACT TACAGTCATC ACTGGCAAAA GACTCTCTGC CTGCCATGTA
  TTAGCTGTGG GATGGTTTGA CTATGTGTGA TGGTTTGTAT ATCCTTGGAC CAGGGAGTGG
  CACCATCTGG AGATGTGGCC TTGTTGGAAT AGGTGTGACC TGGTTGGAAT AGGTGTGTCA
  CTGTGGGTGT GGGCATAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351980100	MGP_WTSI_1_155598141	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226944641					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351980100	MGP_WTSI_1_155598141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153626757 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	within coordinates
Gm28513	predicted gene 28513	1687 bp upstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396399	regulatory region 396399	1431 bp downstream
Rr396400	regulatory region 396400	685 bp upstream
Rr420746	regulatory region 420746	1767 bp distal
Rr420747	regulatory region 420747	1575 bp distal
Rr420748	regulatory region 420748	1588 bp distal
Rr420749	regulatory region 420749	319 bp distal
Rr420750	regulatory region 420750	within coordinates
Rr420751	regulatory region 420751	1351 bp proximal
Tssr9479	transcription start site region 9479	1569 bp downstream
Tssr9480	transcription start site region 9480	1520 bp downstream
Tssr9481	transcription start site region 9481	1488 bp downstream
Tssr9482	transcription start site region 9482	1265 bp downstream
Tssr9483	transcription start site region 9483	855 bp upstream
Tssr9484	transcription start site region 9484	870 bp upstream
Tssr9485	transcription start site region 9485	935 bp upstream
Tssr9486	transcription start site region 9486	991 bp upstream
Tssr9487	transcription start site region 9487	1772 bp upstream
Tssr9488	transcription start site region 9488	1799 bp upstream
Tssr9489	transcription start site region 9489	1841 bp upstream
Tssr9490	transcription start site region 9490	1977 bp upstream