rs226947661 SNP Detail

Summary

• ID
  rs226947661
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93730997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGTGA AATAATTTTG
  AAGTAAAAAG TGAATTATCA GTTACTTACT AGGACATGGA GGAACCTGAA CTGTATAATG
  ATAAATGCAG CCAGTCTGAA AAGACTGTGT ACTGTAAAAT GCAACTACAT GGCATGTTAG
  CAAAGCAATA CTACAGAGAC TCTAAAACGT TTATTGGTTA CAAGTATGCG TGTGTGTGTG
  T
  GCGCGCGCTA TTGTAATAGA CCAAAAGAAT TAAAGGCAGT GAAAAATATT CTTCAGGATG
  CTATAAGGGG GATACTTAAT ACTTCTCAGA AATATTAGAG CCCACCAAGA GTGGACTCTG
  GTAAACCCTG GATTTTAGTT ATATTGTTTC ATTAACTGTA ACAGAGTTGC CGTAGGAATG
  TAAAATGTAT TTTTGCAGGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss350526655	MGP_WTSI_1_95699852	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs226947661					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350526655	MGP_WTSI_1_95699852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93730997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	983 bp distal
Cpgi609	CpG island 609	160 bp proximal
Dtymk	deoxythymidylate kinase	1341 bp upstream
Gm57164	predicted gene, 57164	within coordinates
Gm70929	predicted gene, 70929	within coordinates
Ing5	inhibitor of growth family, member 5	690 bp upstream
Rr29859	regulatory region 29859	within coordinates
Rr366972	regulatory region 366972	1133 bp downstream
Rr396180	regulatory region 396180	421 bp upstream
Tssr8200	transcription start site region 8200	1108 bp downstream
Tssr8201	transcription start site region 8201	670 bp upstream
Tssr13052	transcription start site region 13052	1330 bp upstream
Tssr13053	transcription start site region 13053	495 bp downstream