About   Help   FAQ
rs226947661 SNP Detail
Summary
  • ID
    rs226947661
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr1:93730997 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACACAGTGA AATAATTTTG
    AAGTAAAAAG TGAATTATCA GTTACTTACT AGGACATGGA GGAACCTGAA CTGTATAATG
    ATAAATGCAG CCAGTCTGAA AAGACTGTGT ACTGTAAAAT GCAACTACAT GGCATGTTAG
    CAAAGCAATA CTACAGAGAC TCTAAAACGT TTATTGGTTA CAAGTATGCG TGTGTGTGTG
    T
    GCGCGCGCTA TTGTAATAGA CCAAAAGAAT TAAAGGCAGT GAAAAATATT CTTCAGGATG
    CTATAAGGGG GATACTTAAT ACTTCTCAGA AATATTAGAG CCCACCAAGA GTGGACTCTG
    GTAAACCCTG GATTTTAGTT ATATTGTTTC ATTAACTGTA ACAGAGTTGC CGTAGGAATG
    TAAAATGTAT TTTTGCAGGC                                            
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ss350526655 MGP_WTSI_1_95699852 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
ST/bJ
SWR/J
WSB/EiJ
rs226947661 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss350526655 MGP_WTSI_1_95699852 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:93730997 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi608 CpG island 608 983 bp distal
Cpgi609 CpG island 609 160 bp proximal
Dtymk deoxythymidylate kinase 1341 bp upstream
Gm57164 predicted gene, 57164 within coordinates
Gm70929 predicted gene, 70929 within coordinates
Ing5 inhibitor of growth family, member 5 690 bp upstream
Rr29859 regulatory region 29859 within coordinates
Rr366972 regulatory region 366972 1133 bp downstream
Rr396180 regulatory region 396180 421 bp upstream
Tssr8200 transcription start site region 8200 1108 bp downstream
Tssr8201 transcription start site region 8201 670 bp upstream
Tssr13052 transcription start site region 13052 1330 bp upstream
Tssr13053 transcription start site region 13053 495 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory