TACACAGTGA AATAATTTTG AAGTAAAAAG TGAATTATCA GTTACTTACT AGGACATGGA GGAACCTGAA CTGTATAATG ATAAATGCAG CCAGTCTGAA AAGACTGTGT ACTGTAAAAT GCAACTACAT GGCATGTTAG CAAAGCAATA CTACAGAGAC TCTAAAACGT TTATTGGTTA CAAGTATGCG TGTGTGTGTG T GCGCGCGCTA TTGTAATAGA CCAAAAGAAT TAAAGGCAGT GAAAAATATT CTTCAGGATG CTATAAGGGG GATACTTAAT ACTTCTCAGA AATATTAGAG CCCACCAAGA GTGGACTCTG GTAAACCCTG GATTTTAGTT ATATTGTTTC ATTAACTGTA ACAGAGTTGC CGTAGGAATG TAAAATGTAT TTTTGCAGGC T = T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SJL/J |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss350526655 | MGP_WTSI_1_95699852 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SJL/J |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs226947661 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss350526655 | MGP_WTSI_1_95699852 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C/T |
Location: Chr1:93730997 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi608 | CpG island 608 | 983 bp distal | ||||||
Cpgi609 | CpG island 609 | 160 bp proximal | ||||||
Dtymk | deoxythymidylate kinase | 1341 bp upstream | ||||||
Gm57164 | predicted gene, 57164 | within coordinates | ||||||
Gm70929 | predicted gene, 70929 | within coordinates | ||||||
Ing5 | inhibitor of growth family, member 5 | 690 bp upstream | ||||||
Rr29859 | regulatory region 29859 | within coordinates | ||||||
Rr366972 | regulatory region 366972 | 1133 bp downstream | ||||||
Rr396180 | regulatory region 396180 | 421 bp upstream | ||||||
Tssr8200 | transcription start site region 8200 | 1108 bp downstream | ||||||
Tssr8201 | transcription start site region 8201 | 670 bp upstream | ||||||
Tssr13052 | transcription start site region 13052 | 1330 bp upstream | ||||||
Tssr13053 | transcription start site region 13053 | 495 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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