rs226949590 SNP Detail

Summary

• ID
  rs226949590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120241409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCGGAG CGGAGCCGCA
  GCCCGGCCTC CTAACGCGGT GCACGAGAAG GAGGCGCTGT GATTTGTCAG TTTTGCAACT
  GGGCAGTGTG AGGGAGGCCT CGCCCAAGGT CAGGTCCGGG CTGTTCTTGC CTGCTGTGGA
  AGTTGGCGGC CCCACCCCAC TTGGAGCAGG AATTGAGAAT GCCTGGCTTC CGTGAGCCTG
  Y
  AGGCCAGGGC TGCAGGCTCA CGATTGCAGG GCTGCCAGAA GTGGGCGTGT CTCCGTTGTA
  AAGAAAGACT CAGTCTAGAG AAATGATAAA AAACATTTTT CCTTTGCTGG CTTTGGTCGG
  CTTTTATTGT GACGTTGTTG CATCTTATTT CATATTCCGG TGGATTAATG CAGCAGTTGA
  AGAGTTGGGG AGATTTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941896	MGP_WTSI_11_120211897	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226949590					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941896	MGP_WTSI_11_120211897	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120241409 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	within coordinates
Cpgi4301	CpG island 4301	within coordinates
Gm72337	predicted gene, 72337	358 bp upstream
Rr461641	regulatory region 461641	1011 bp distal
Rr461642	regulatory region 461642	369 bp distal
Rr461643	regulatory region 461643	within coordinates
Rr461644	regulatory region 461644	31 bp proximal
Rr461645	regulatory region 461645	1133 bp proximal
Tssr3756	transcription start site region 3756	1293 bp downstream
Tssr3757	transcription start site region 3757	297 bp downstream
Tssr106280	transcription start site region 106280	1801 bp downstream
Tssr112292	transcription start site region 112292	1792 bp upstream
Tssr112293	transcription start site region 112293	1156 bp upstream
Tssr112294	transcription start site region 112294	721 bp upstream