rs226958639 SNP Detail

Summary

• ID
  rs226958639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63070641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGATGG AGGGATGGAG
  GCATGGATCA CAGTGGCAGC AGTGGAGAGA GGACAGGTGG GAGAGGGGGA GAACATGATA
  GACTGCACAG CATCAGGGAG GAATGGACAG AGTCTACACT TCACCCTAGA CCCACTGGCC
  TGAGGCTCTC CAGCTAGGTC CTTGGGGTAG TTGTTCCTTT CCTCAGCCAA GGGAGGAATA
  Y
  GCAAGATGGG GGAAGTTGCA CAGGAAGCCT AGTGCTGGAG ACACAGTCCT TGAGAGGCTC
  ATGAGACATC TGCTGAGGAC AGCCATGAAC CTGAGGCTCA GAAGCAAGGT CCTAGCTGAG
  GGTCCCAGGA CAAGATGGGG GTACCAGGGA GCCTGGTCAT TCCTGTGCCC CCCACTCACC
  GCCATCGAGT ACTGGTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361729060	MGP_WTSI_4_62813438	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226958639					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361729060	MGP_WTSI_4_62813438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63070641 () rs orientation: forward

Symbol	Name	Function Class
Ambp	alpha 1 microglobulin/bikunin precursor	within coordinates
Rr593477	regulatory region 593477	1064 bp distal
Rr593478	regulatory region 593478	1759 bp proximal
Tssr37529	transcription start site region 37529	921 bp downstream
Tssr37530	transcription start site region 37530	168 bp upstream
Tssr37531	transcription start site region 37531	237 bp upstream
Tssr42025	transcription start site region 42025	213 bp downstream
Tssr42026	transcription start site region 42026	242 bp downstream
Tssr42027	transcription start site region 42027	267 bp downstream
Tssr42028	transcription start site region 42028	286 bp downstream
Tssr42029	transcription start site region 42029	1726 bp downstream
Tssr42030	transcription start site region 42030	1876 bp downstream