rs226976624 SNP Detail

Summary

• ID
  rs226976624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40903949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCATCCTC GCGATCCGCT
  AGGGCGGGGC TCTCATCAAA CCATGCCCGC CGCATTCGGG AAGACTCCAC AGGCCGCGGT
  CGCCCGCAGC GTTTAGGGAA TGCCCGCAAG TGGCCACGTC ACTTTCCAGG GTGCCCGCCC
  CCTAACCTGC CTCGCCCTCT ACCCGCCCCG CCCCTCACCC TGACTGGCCC TCGCCCTGGT
  M
  CTTGGGCACC TGGCCTACTG AACGCTGATT ATCTTGGCTC TTGCCTACAT CACGCCCCGC
  CCACTGGCAC GCCTTTCCCC TTGCGCGCCC CGCCTCTTGG ACGCCTCCGC CTCCGCACGC
  CCAGCCCATC GGCCCGCCTC AGCCTATAAA CGCCCCGCCT ACCTGGCCAC CCCGCCCATT
  GGCCCTCCTC GCCCTCTGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357671133	MGP_WTSI_3_40753436	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226976624					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671133	MGP_WTSI_3_40753436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40903949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	within coordinates
Larp1b	La ribonucleoprotein 1B	314 bp upstream
Rr397652	regulatory region 397652	within coordinates
Rr575871	regulatory region 575871	within coordinates
Rr575872	regulatory region 575872	1 bp proximal
Rr575873	regulatory region 575873	540 bp proximal
Rr575874	regulatory region 575874	627 bp proximal
Rr575875	regulatory region 575875	1289 bp proximal
Tssr28976	transcription start site region 28976	267 bp upstream
Tssr28977	transcription start site region 28977	304 bp upstream
Tssr28978	transcription start site region 28978	401 bp upstream
Tssr28979	transcription start site region 28979	431 bp upstream
Tssr28980	transcription start site region 28980	449 bp upstream
Tssr28981	transcription start site region 28981	888 bp upstream
Tssr28982	transcription start site region 28982	1124 bp upstream
Tssr28983	transcription start site region 28983	1265 bp upstream