rs226980466 SNP Detail

Summary

• ID
  rs226980466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155119005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGGGAT CAGCGAGGCG
  GAGTCGCGGG AGGCCTCAGC ACCGCTGGGC CTCACACAGA GCTCTGTCCG CAGCCGACCG
  CTGTAAGGAG GTGCAGCAGA TCCGCGACCA GCACCCCAGT AAGATCCCGG TGAGTCTCTA
  GCACCCCCCA GCCACGCCCT GCCCTGCCAG GTCCCGCCCT TGGCTTACGA GTCCCCCGCC
  Y
  ACTCCACTCC AGGTGATCAT CGAGCGCTAC AAGGGTGAGA AGCAGCTGCC TGTCCTGGAT
  AAGACCAAGT TTCTGGTCCC AGACCATGTT AACATGAGCG AGTTGGTCAA GATCATCCGG
  TGCGTGGGCA GCCTCCTACA GGCCTTGGGT GGGGCAGGGT CAGGTTCCAC AAGAAGGGAT
  GGAGTGGGGC GAGGGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356211915	MGP_WTSI_2_155102821	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226980466					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356211915	MGP_WTSI_2_155102821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155119005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	within coordinates
Gm75512	predicted gene, 75512	816 bp upstream
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	within coordinates
Pigu	phosphatidylinositol glycan anchor biosynthesis, class U	1158 bp downstream
Rr568016	regulatory region 568016	839 bp distal
Rr568017	regulatory region 568017	778 bp distal
Tssr21073	transcription start site region 21073	735 bp downstream
Tssr21074	transcription start site region 21074	611 bp downstream
Tssr21075	transcription start site region 21075	591 bp downstream
Tssr21076	transcription start site region 21076	532 bp downstream
Tssr21077	transcription start site region 21077	493 bp downstream
Tssr21078	transcription start site region 21078	471 bp downstream
Tssr21079	transcription start site region 21079	465 bp downstream
Tssr21080	transcription start site region 21080	313 bp downstream
Tssr21081	transcription start site region 21081	170 bp downstream
Tssr21082	transcription start site region 21082	155 bp downstream
Tssr21083	transcription start site region 21083	130 bp downstream
Tssr21084	transcription start site region 21084	104 bp downstream
Tssr21085	transcription start site region 21085	within coordinates