rs226983719 SNP Detail

Summary

• ID
  rs226983719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62766388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACCACA CATACCACAC
  ACACATACAC AAACCAACAC ATATCATACA CTCATATACA TACCACACAC ACATACACAC
  ACCACACATA CCAGAGGCAC ACACAGGCAT ACACCATACA CATACCGCAC ACACACACAG
  ACCGTACACC ACACACAAAC ACATATGCAT ACAACAACAC ACACCACCAA CACACACACA
  Y
  ATATACAAAT ACACTCACCA CCCTCTTTGG GTCCCCACCA CTACTACCTT TTCTCTCCAT
  CTGGAATCCT AAGATGTGAA GGCCAGTAAT GGAGTGTCAG CGGAAGTAAT TGATTCCTCA
  CACACAGAGA ATGCCCCTGC CTTTAGTGTC AATGGAGCTG AACCAGATTC TGGGCGGGTG
  AGCGAGACGT GTAAACAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349851987	MGP_WTSI_1_62773803	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226983719					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349851987	MGP_WTSI_1_62773803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62766388 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Rr412041	regulatory region 412041	1670 bp distal
Tssr6998	transcription start site region 6998	1419 bp downstream
Tssr6999	transcription start site region 6999	1195 bp downstream
Tssr7000	transcription start site region 7000	907 bp downstream
Tssr7001	transcription start site region 7001	821 bp downstream
Tssr7002	transcription start site region 7002	735 bp downstream
Tssr7003	transcription start site region 7003	687 bp downstream
Tssr7004	transcription start site region 7004	505 bp downstream
Tssr7005	transcription start site region 7005	446 bp downstream
Tssr7006	transcription start site region 7006	286 bp downstream
Tssr7007	transcription start site region 7007	261 bp downstream
Tssr7008	transcription start site region 7008	227 bp downstream
Tssr7009	transcription start site region 7009	157 bp downstream
Tssr7010	transcription start site region 7010	87 bp downstream
Tssr7011	transcription start site region 7011	52 bp downstream