rs226985394 SNP Detail

Summary

• ID
  rs226985394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105432108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCCTCA ATGAGATACT
  CGCAAAGGAA CCTAGCAACT AGAAAGGTCT TAATGCCATA TGATGAGCTA TGGTTTATCT
  CACCAATCCA AGGTTGATAT GACATGCAAA AGTAGTATAA AACTTTTTAT AGATCATTTT
  AACAAAAATG ATCCTCAACA GATGAAGGAA AAGTTGTGTC ACTAAGGAGT CAACAGACAG
  Y
  AAAACAGCTG AGTGAGATGT TTATCAGCAG TTATCCCAGA CTTTTTGGGT AGAGAAGGGG
  ACCCCAGAGT CGGGGAGACC ACCGACTATA AGGGGAGTTG GGGTTTTATT TGGGTTTAAT
  GTATCCTGCC CAGTGATTTC CCCTCCCTCC ATATTTCAAT TGTTCTGAAT CTGTGCACAC
  CTTCTATAGC TGGCAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389811543	MGP_WTSI_13_106085680	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226985394					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389811543	MGP_WTSI_13_106085680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105432108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	792 bp distal
Rnf180	ring finger protein 180	702 bp upstream
Rr389014	regulatory region 389014	1356 bp upstream
Rr485530	regulatory region 485530	1209 bp distal
Rr485531	regulatory region 485531	681 bp distal
Tssr123955	transcription start site region 123955	1298 bp upstream
Tssr123956	transcription start site region 123956	1260 bp upstream
Tssr123957	transcription start site region 123957	1242 bp upstream
Tssr123958	transcription start site region 123958	1181 bp upstream
Tssr123959	transcription start site region 123959	1129 bp upstream
Tssr123960	transcription start site region 123960	934 bp upstream
Tssr123961	transcription start site region 123961	771 bp upstream