rs226987159 SNP Detail

Summary

• ID
  rs226987159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93020780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCC AGAGAGGCAG GCCTGTCTTC
  Y
  GACACCATGC ATAGGATATA GGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395100	CHEV_2_93030592	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226987159					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93020780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230071H18Rik	RIKEN cDNA C230071H18 gene			472 bp upstream
Cpgi11943	CpG island 11943			1441 bp distal
Rr561111	regulatory region 561111			590 bp distal
Rr561112	regulatory region 561112			1448 bp distal
Rr561113	regulatory region 561113			1232 bp distal
Rr561114	regulatory region 561114			1789 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18983	transcription start site region 18983			676 bp upstream
Tssr18984	transcription start site region 18984			1971 bp upstream