rs226989967 SNP Detail

Summary

• ID
  rs226989967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCCTT TTGGTTTTTT
  TTTTTTTTTT TTTTTTTGGT TTTTCGAGAC AGGGTTTCTC TGTGTAGTCC TGGCTGTCCT
  GGAACTCACT CTGTAGACCA GACTGGCCTC GAACTCAGAA ATCCTCCTCC CTCTGCCTCC
  ACTGGGATTA AAGGCGTGCG CCACCACTGC TCGGTTGTTT TGTTTTAAAG TAGAACATAT
  Y
  GTCTACTACT GAAGTACTAA TATTTCCCCA CTTCTCAATT TGAGAGGCAC TGTTGGACGT
  TAGTGTAAGC CAAAGTTGGG CAATAGAAGA GGGTGAAAGA GTTAAGGAAA AAGCTTTGTA
  GGAGGAGGGC AGACACCTGA GGAGAGGAGC TTGAGCCAGC ACCTTCCTGA CAGAAGAGGA
  AACAAGTTTA ACAGGATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210115	MGP_WTSI_10_128184505	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226989967					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210115	MGP_WTSI_10_128184505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	253 bp proximal
Gm31504	predicted gene, 31504	1567 bp downstream
Gm66065	predicted gene, 66065	1100 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	Intron
Rr385481	regulatory region 385481	within coordinates
Rr441314	regulatory region 441314	1527 bp distal
Rr441315	regulatory region 441315	1111 bp distal
Rr441316	regulatory region 441316	610 bp distal
Rr441317	regulatory region 441317	within coordinates
Rr441318	regulatory region 441318	516 bp proximal
Rr441319	regulatory region 441319	1073 bp proximal
Rr441320	regulatory region 441320	1090 bp proximal
Rr441321	regulatory region 441321	1267 bp proximal
Tssr96443	transcription start site region 96443	975 bp downstream
Tssr96444	transcription start site region 96444	339 bp upstream
Tssr96445	transcription start site region 96445	401 bp upstream
Tssr96446	transcription start site region 96446	1052 bp upstream
Tssr96447	transcription start site region 96447	1302 bp upstream
Tssr99954	transcription start site region 99954	1983 bp upstream
Tssr99955	transcription start site region 99955	1950 bp upstream
Tssr99956	transcription start site region 99956	1197 bp upstream
Tssr99957	transcription start site region 99957	1137 bp upstream
Tssr99958	transcription start site region 99958	179 bp downstream
Tssr99959	transcription start site region 99959	271 bp downstream