About   Help   FAQ
rs226992947 SNP Detail
Summary
  • ID
    rs226992947
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:88824195 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGAGGTGGC CGCTGTGGCG
    CGAGCGGAGG GGAAGTGGAA TCCAGGGCGG GGGAGGGGGC ACCGGGCACA TGCGCCGCGC
    GCACCCGGGG CTGAGACGAG GCTCGGAGGC GGAGGTGAGC GAGCGGCCCC GCCCAGGCTC
    CGCCCTCGGG GCGGGGCTTT CCCGCCGGTA AGGGTGTGGG TGGGGTGACC TGAGCGCCTC
    Y
    AGAGTGGAAG TTGTCCCAGG CTCTCCTGCT CAGGTTAGAG CTGAGGTCTG CGGGTCACCG
    AGGCCCGGCG AAGTTTCCGG AAGGAATGGG TTACCTAGCT CTAAAACGTT TTGGGACGAC
    GCTGAGGGGG CGTTGATACC CCAACCTCAA AATTCGTGCA GAAGGCCAAC TTTGTTTTGA
    ACGGAAGCAC TGATTTTATA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365796653 MGP_WTSI_5_89105361 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226992947 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss365796653 MGP_WTSI_5_89105361 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:88824195 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi16030 CpG island 16030 within coordinates
Gm71600 predicted gene, 71600 within coordinates
Grsf1 G-rich RNA sequence binding factor 1 165 bp upstream
Rr378262 regulatory region 378262 1602 bp upstream
Rr614150 regulatory region 614150 681 bp distal
Rr614151 regulatory region 614151 180 bp distal
Rr614152 regulatory region 614152 358 bp distal
Rr614153 regulatory region 614153 297 bp distal
Rr614154 regulatory region 614154 103 bp distal
Rr614155 regulatory region 614155 within coordinates
Tssr51689 transcription start site region 51689 1109 bp upstream
Tssr51690 transcription start site region 51690 773 bp upstream
Tssr51691 transcription start site region 51691 744 bp upstream
Tssr51692 transcription start site region 51692 681 bp upstream
Tssr51693 transcription start site region 51693 207 bp upstream
Tssr51694 transcription start site region 51694 150 bp upstream
Tssr51695 transcription start site region 51695 127 bp upstream
Tssr51696 transcription start site region 51696 99 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory