rs226997702 SNP Detail

Summary

• ID
  rs226997702
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53627763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGTGT AGGTGTGCAC
  CAGCAGACCC AGCGCCCATT GGTTCCTGGC AGCTAATTTA CACAAATGAT CTCCATTTCA
  TACTCTGTCC AAACAGGACA AGTTTTAGAA ACTGTCAATG GGGATATTTT CTCACCCCTT
  GAGTCTCCTC TCTAGGCCCG TGCAAAAGTG TGCTCATGAG GTTTTTTTTT TTTTTTTTTT
  K
  TTTTGAGTTT GTGTTTGTCA TTGGAGTTCA GGTGTCAGGA TAGCATCTGC CTTGGGAGGT
  GATGGGCAGG GGAGAAGGGT ATTTGTGACA TTTAGTGTCT TTATTCTCTC TGCAAATAAC
  AGGGTTCGAC TTTGCAAACC CAAAGCCTGA ATATCTTTGG GGAAAGCTCA TCTCACCTGA
  CTTTGAAATT TTAAGCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388642560	MGP_WTSI_13_53569096	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	G	T	T	T	T	T	T	T	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226997702					SNP	G	G	G	G	T	G	G	G	G	G	T	T	T	T	T	T	T	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388642560	MGP_WTSI_13_53569096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53627763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	571 bp distal
Cpgi5624	CpG island 5624	1879 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	947 bp upstream
Rr281405	regulatory region 281405	562 bp distal
Rr281406	regulatory region 281406	1437 bp proximal
Tssr122586	transcription start site region 122586	1002 bp upstream
Tssr122587	transcription start site region 122587	940 bp upstream
Tssr122588	transcription start site region 122588	917 bp upstream
Tssr122589	transcription start site region 122589	877 bp upstream