rs227006602 SNP Detail

Summary

• ID
  rs227006602
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACTGCTG TAGCACCCTG
  CCTGCCTGCC TGCCATGCTC CCTCTGATGA CAGTGATGGC TTCTAAGCCC TGAAACCATA
  AGCTTCAAAT AAATGTTTTC TTTTATAAGT AGCCAAGACA GACTGTAATG GGTAGTGTAA
  GCCAAATAAA CTCTCCTCCC CAGGTTTGCT TTTTATCACA GCAAACTAAG ATACCTGTGG
  K
  TTTGGTCTTC AACACCGTCC GGAACTGAGT CTCCTGGCTG TCGTCTTGGG TGCTATTTCC
  TCCTCCATCC CACACACTTC CGCTCTCGGT GGTCCCTGAA AGAGATGCAG GGCTGTTAGC
  CTCCCCGAAT CACCAAACTC CTTTCTTTCC TGAGTCCCTC CTTCGTTCAA TACCTCTCTG
  AGCATTTGCT CCCCGCTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873536	MGP_WTSI_5_137634760	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227006602					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873536	MGP_WTSI_5_137634760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190974 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	1334 bp upstream
Tssr49319	transcription start site region 49319	1170 bp downstream
Tssr49320	transcription start site region 49320	1158 bp downstream
Tssr53954	transcription start site region 53954	1240 bp upstream
Tssr53955	transcription start site region 53955	1224 bp upstream
Tssr53956	transcription start site region 53956	1205 bp upstream
Tssr53957	transcription start site region 53957	1188 bp upstream
Tssr53958	transcription start site region 53958	1133 bp upstream
Tssr53959	transcription start site region 53959	1120 bp upstream
Tssr53960	transcription start site region 53960	1054 bp upstream
Tssr53961	transcription start site region 53961	955 bp upstream
Tssr53962	transcription start site region 53962	937 bp upstream
Tssr53963	transcription start site region 53963	898 bp upstream
Tssr53964	transcription start site region 53964	858 bp upstream
Tssr53965	transcription start site region 53965	833 bp upstream
Tssr53966	transcription start site region 53966	26 bp downstream
Tssr53967	transcription start site region 53967	52 bp downstream