rs227008044 SNP Detail

Summary

• ID
  rs227008044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:74546331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGTACTA TGGCTTTCGG
  TTAAATTTAG AGAAAGTAGA CTCCTTCCCT GGCCTACAAG CCCTGTATGA TGTGGTCCTT
  AGTCACGTTT ATGGGCTTGG TTTTTGTCAC TTGCTCCCTA AGCTCCGACC AAGAAGTATA
  TGAACTTTTC TGTTACATAT TCTCTACCTG GAATGTCTTT CTTAGGACTC TGCCTCCATA
  Y
  ATACACACAA GTTTACCTCA GAGTGACTTT TTCCGACCAT ATTCATAGTA GCTTGTAACC
  CCAACATTTT CTCATATAGA GCACCGATCC CACGGTTTAA TTACTAGACT TTTATATTTT
  ATTTTACTTT TACTTGTGGG TTGTCTGTAC TCTGTAAGTC AGGGGCAAGT ATTTGGTGAG
  GCCTGTTCAC TTGTTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350125643	MGP_WTSI_1_74553746	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227008044					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350125643	MGP_WTSI_1_74553746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74546331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot9	CCR4-NOT transcription complex, subunit 9			Intron
				Noncoding-Transcript-Variant
Cpgi385	CpG island 385			255 bp distal
Rr396106	regulatory region 396106			1096 bp downstream
Rr413210	regulatory region 413210			1380 bp distal
Rr413211	regulatory region 413211			1104 bp distal
Rr413212	regulatory region 413212			within coordinates
Rr413213	regulatory region 413213			507 bp distal
Tssr7425	transcription start site region 7425			1134 bp downstream
Tssr7426	transcription start site region 7426			1067 bp downstream
Tssr7427	transcription start site region 7427			1052 bp downstream
Tssr7428	transcription start site region 7428			798 bp downstream
Tssr7429	transcription start site region 7429			785 bp downstream
Tssr7430	transcription start site region 7430			454 bp downstream
Tssr12315	transcription start site region 12315			1459 bp upstream
Tssr12316	transcription start site region 12316			1328 bp upstream
Usp37	ubiquitin specific peptidase 37			Intron