rs227012415 SNP Detail

Summary

• ID
  rs227012415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCACTGG CTGGCATCAC TTCCTGTTTT
  TCAGCATGAT TAAGGAGTTC AGATTCTTAT ATGAAATAAG ACGATGAATC ACAGAAATGA
  GAATCCTGGG CTGCTGGCTG GTTGAAGCAG CTGCTGGCCA GATTTCAGCC TTCTTGTCCA
  Y
  AGTTCTGTAT TAAAGAGAGA GGATCAGGCC AGGAGCAGGA GGCTACTGTG ACCCGGTGGG
  GAAGGAAACT CCAGGAAACA GCATTTTCTT TCAAGTCTGA GGCCTGGATC TCGGGTGGAG
  AAGAGCACCA GGAACGGGAA GAGAGAAGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325229	CHEV_10_59842566	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227012415					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215597 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr368996	regulatory region 368996	1391 bp upstream
Rr432129	regulatory region 432129	250 bp proximal
Rr432130	regulatory region 432130	1198 bp proximal
Tssr93630	transcription start site region 93630	769 bp upstream
Tssr93631	transcription start site region 93631	828 bp upstream
Tssr97724	transcription start site region 97724	404 bp downstream