rs227013245 SNP Detail

Summary

• ID
  rs227013245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104702258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCGTGG CTCTAGGCAG
  AAACCCTCCT GGAGGGTCAT CTTGGGGGCA CAGGAAGCAA GACCAGGCTG ATGAGACACA
  CGCAAGAGGC TTTTGCATAG AACAGCATTT TGTTTTTCTT AAAGCAGCTC AGGGGCAGAG
  TGCTTGCCTA GCATATTTGA GGCTCTGGGT TCGATCCCCA GCACTGCAAA GGAGAGGGTT
  W
  AAAAAAAAAA AAAAGCTTTC TTCCTCCCCC TTCCTCCGAG TTTTAGCAGC TTGGGTTGTC
  TTCCCTAGCA GAGGAAGGGG CGGAATGGTC TGGGCTGTAA ACTTCCCGGC CTTCCCATCT
  CTTGCAGGGA CAGGAGAGCT GGGTTCTGGG TCAGGGATAG GCAGCAATAA GGCTTGGCTG
  GTGTGAGAAG GCGGGCGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359096411	MGP_WTSI_3_104597860	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227013245					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359096411	MGP_WTSI_3_104597860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104702258 () rs orientation: forward

Symbol	Name	Function Class
Gm66976	predicted gene, 66976	381 bp upstream
Mov10	Mov10 RISC complex RNA helicase	within coordinates
Rhoc	ras homolog family member C	483 bp downstream
Rr77010	regulatory region 77010	57 bp distal
Tssr31060	transcription start site region 31060	901 bp downstream
Tssr31061	transcription start site region 31061	832 bp downstream
Tssr31062	transcription start site region 31062	637 bp downstream
Tssr31063	transcription start site region 31063	953 bp upstream
Tssr34891	transcription start site region 34891	483 bp upstream