rs227019395 SNP Detail

Summary

• ID
  rs227019395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90600809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTGGAT TTGATTTGAG
  GCACAGTACT ACACAGGTTG TTGGCTCTTT TTTTTTTTCT TTCCTCCTGG AGGATTTTTC
  TTCCCCTACT CTTCTCAGTA TCTCTTGCAG TCATACCCCA CCCCAGTCGT TTTCTGGGAG
  GCAACTAGTT GTTAAAGCTT GTTCAGTCTA CTTAGTTGAG GAGGCACCCA AGAAACCAGG
  Y
  AGCACGGGGT CTTAAAGGGG CAGAGCATAG TTTGCTCTGC TGACCACAAA GGGTGTGATA
  CAGTTGATGG AGACTCAGAT AAAGTGAAAA GATCAAGATG TGGTTGCTGA CTATCATCTA
  GCTGCAAGGC TTGCACTCAC TTGCTGGGAC ACCCTGGCTA AGCAGTACCC CTTTCCACAA
  ACTGAGTAGT TCATGAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358838060	MGP_WTSI_3_90497424	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227019395					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358838060	MGP_WTSI_3_90497424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90600809 () rs orientation: forward

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	within coordinates
Tssr949	transcription start site region 949	712 bp downstream
Tssr950	transcription start site region 950	581 bp upstream
Tssr951	transcription start site region 951	669 bp downstream
Tssr952	transcription start site region 952	1620 bp upstream
Tssr953	transcription start site region 953	1666 bp downstream
Tssr30268	transcription start site region 30268	864 bp downstream
Tssr30269	transcription start site region 30269	753 bp downstream
Tssr30270	transcription start site region 30270	605 bp downstream
Tssr34252	transcription start site region 34252	769 bp upstream
Tssr34253	transcription start site region 34253	637 bp upstream
Tssr34254	transcription start site region 34254	1452 bp downstream
Tssr34255	transcription start site region 34255	1547 bp downstream
Tssr34256	transcription start site region 34256	1622 bp downstream
Tssr34257	transcription start site region 34257	1682 bp downstream
Tssr34258	transcription start site region 34258	1743 bp downstream
Tssr34259	transcription start site region 34259	1870 bp downstream