rs227019781 SNP Detail

Summary

• ID
  rs227019781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99192246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggCTTGAAG AATGAATATA AGAACTTTTA
  ATACAACTAT TGATAAAGCC AAATTGTCTA TAGACATAAA GAGGTGTTTT CCTGAGTCAG
  GTTCAGAAAC CTACAGAAGG AAACAGGCAA CGTCTTGGTC TTTACCCCGG CTTTGGAGGG
  R
  TAAAGAGGTG CAATGCCTCC AACCAGGGCC AGCTGTACTA GCCCAAGAAC TTGAGCATGC
  ATGCCCATTA AGTAGCTTCG AGTTCCCTTA TCTACATAAC TGAACGTTTA TCTCTCACTG
  TAGATGTTAC AGAGGCAGAT TCTGAAAGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325080396	CHEV_15_99124796	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227019781					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99192246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7702	CpG island 7702	116 bp proximal
Fam186b	family with sequence similarity 186, member B	within coordinates
Prpf40b	pre-mRNA processing factor 40B	722 bp upstream
Rr312428	regulatory region 312428	within coordinates
Tssr133010	transcription start site region 133010	846 bp upstream