rs227020276 SNP Detail

Summary

• ID
  rs227020276
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGGAG AATTGCAAGG
  AGGACAATGT GTGAGCTTTT GAAAACTTAG TTGAGGTTCT TATTAGCCTG TTTTGTTTCT
  TTTTTTTTTT TTTTTTTTTC CTTTTGGTTT TTTTTTTTTT TTTTTTTTTT GGTTTTTCGA
  GACAGGGTTT CTCTGTGTAG TCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGACTGGC
  C
  TCGAACTCAG AAATCCTCCT CCCTCTGCCT CCACTGGGAT TAAAGGCGTG CGCCACCACT
  GCTCGGTTGT TTTGTTTTAA AGTAGAACAT ATTGTCTACT ACTGAAGTAC TAATATTTCC
  CCACTTCTCA ATTTGAGAGG CACTGTTGGA CGTTAGTGTA AGCCAAAGTT GGGCAATAGA
  AGAGGGTGAA AGAGTTAAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210112	MGP_WTSI_10_128184412	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227020276					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210112	MGP_WTSI_10_128184412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	346 bp proximal
Gm31504	predicted gene, 31504	1474 bp downstream
Gm66065	predicted gene, 66065	1007 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	533 bp upstream
Rr224483	regulatory region 224483	1024 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	882 bp downstream
Tssr96444	transcription start site region 96444	432 bp upstream
Tssr96445	transcription start site region 96445	494 bp upstream
Tssr96446	transcription start site region 96446	1145 bp upstream
Tssr96447	transcription start site region 96447	1395 bp upstream
Tssr99954	transcription start site region 99954	1890 bp upstream
Tssr99955	transcription start site region 99955	1857 bp upstream
Tssr99956	transcription start site region 99956	1104 bp upstream
Tssr99957	transcription start site region 99957	1044 bp upstream
Tssr99958	transcription start site region 99958	272 bp downstream
Tssr99959	transcription start site region 99959	364 bp downstream