rs227038867 SNP Detail

Summary

• ID
  rs227038867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69760054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCTAAG AGTTAAAGAA
  TCTGCAGCGA CTGAAAGAAC TAACTTTCTG ACAGGTGGAC AGGCTGGGGT GAAAGGCTAG
  CTGAGCGGGG TGGGGGATGG GGTGTGGGGG TGGGGGTGGG GAAGAAGCAT TCCACATCCC
  AGGCTTGTGG GAACCAAATC TTGTGTAAAA CGCCTTACAA AACACCTTGG CTTGTGGTTT
  Y
  TAGATATGGA AAACAAAACA AAACAAAACA AAACAAACAA ACAACAACAA CAACAAAAAC
  CAAGCAAACA AACAAACAAA AAAAAAACCC CAGCCTAGCA TTCAGACCTT TCTCTTCCCG
  AAGCCTGGCT TCCCTCCCAC GCATGTAGTG TCCTCTTGGC TTGCAGCCGG ACTGAGCGGA
  TTAAAACAGA TCAACAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380796991	MGP_WTSI_10_69386972	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227038867					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380796991	MGP_WTSI_10_69386972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69760054 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Rr433504	regulatory region 433504	220 bp distal
Rr433505	regulatory region 433505	781 bp proximal
Rr433506	regulatory region 433506	1920 bp proximal
Tssr93970	transcription start site region 93970	73 bp downstream
Tssr93971	transcription start site region 93971	1260 bp upstream
Tssr93972	transcription start site region 93972	1542 bp upstream
Tssr93973	transcription start site region 93973	1576 bp upstream
Tssr93974	transcription start site region 93974	1605 bp upstream
Tssr93975	transcription start site region 93975	1631 bp upstream
Tssr93976	transcription start site region 93976	1754 bp upstream