rs227040042 SNP Detail

Summary

• ID
  rs227040042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9815021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGACCTG AGAACTTGAG
  AATGTTACAC TGCCTTAGCT CAGATAAATG CACACCTGCA GCCCCAGCTA CTAAGGAGGC
  TGTGCAGCCT AGGCAGAGCA AGCCCCATCT TTAAAAGCTA TCTAGAGAAC AAGCAAAGGC
  CTGAAACATA AATCATAAAG AATGAACACA GTGGGAAAAC CAGGCCTAGT GGTGTGGCCA
  M
  TGTGGCGACC GGGGTGGGGA AATCAAGTGC AGGGTACCCA CGGGCAGCAG AGTGAGTTCA
  AGGCCAGCAT GGGCAATTTA TTGAGACCTT GCCTCAGAGT GAAAAGTGAA ACCAAGGCTA
  AAGAGGGGGC TCCAGTGGCA GAAACTGTAA TCTTGACTTC AAATGCCACA TAGTAGCTGT
  GTTCCTTCTG TTGGCTGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370703	MGP_WTSI_16_9997250	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227040042					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370703	MGP_WTSI_16_9997250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9815021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	1130 bp distal
Gm30668	predicted gene, 30668	52 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	1597 bp upstream
Rr511425	regulatory region 511425	1744 bp distal
Rr511426	regulatory region 511426	1636 bp distal
Rr511427	regulatory region 511427	961 bp proximal
Tssr139896	transcription start site region 139896	1853 bp upstream
Tssr139897	transcription start site region 139897	1814 bp upstream
Tssr139898	transcription start site region 139898	1785 bp upstream
Tssr139899	transcription start site region 139899	1757 bp upstream
Tssr139900	transcription start site region 139900	1714 bp upstream
Tssr139901	transcription start site region 139901	1638 bp upstream
Tssr139902	transcription start site region 139902	1608 bp upstream
Tssr139903	transcription start site region 139903	1576 bp upstream
Tssr139904	transcription start site region 139904	1488 bp upstream
Tssr139905	transcription start site region 139905	1432 bp upstream
Tssr139906	transcription start site region 139906	1339 bp upstream