rs227049690 SNP Detail

Summary

• ID
  rs227049690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142210581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGAGGG ACACACCCCC
  TCCACAGGCT ATGTGGCTAC AGGCGGGGAC AATGGTTAGC TAGCTTTTTT AGTGGTGGGA
  GGCCACGATG ACCCACAGTA AGCCACCCTT GACCCTTCAG TTAAGTAGAG CCCTCCAGGC
  CGCAGCCTCA ATCTCTGCTC CATAGGCCCA GGGGATTTCT TGCTGCAAAG AAACATGTGA
  R
  AGACCAGTGC GGAATAATCA AGAAACAAAT TTGTTCGAGC TCCCTTGGGT AACTAAAAGT
  CATCTTTGCC CACTTCATCA AGACCCAGAC CGATCCTCCC AATACCCTCT GTGCCACCAA
  CCACTTGCGA TCAGCAGGCT ATAGCTACAG CAGTTAGTTC TGGGGGCGGG GGGCAGGCAG
  ACGGAGCTGA CCTCGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454600	MGP_WTSI_7_149842749	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227049690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454600	MGP_WTSI_7_149842749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142210581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1426 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1848 bp upstream
Rr658247	regulatory region 658247	within coordinates
Rr658248	regulatory region 658248	642 bp proximal
Rr658249	regulatory region 658249	1960 bp proximal
Tssr70241	transcription start site region 70241	1688 bp upstream
Tssr70242	transcription start site region 70242	1752 bp upstream
Tssr75881	transcription start site region 75881	1132 bp upstream
Tssr75882	transcription start site region 75882	1022 bp upstream
Tssr75883	transcription start site region 75883	786 bp upstream
Tssr75884	transcription start site region 75884	746 bp upstream
Tssr75885	transcription start site region 75885	677 bp upstream
Tssr75886	transcription start site region 75886	654 bp upstream
Tssr75887	transcription start site region 75887	628 bp downstream
Tssr75888	transcription start site region 75888	1913 bp downstream