rs227050771 SNP Detail

Summary

• ID
  rs227050771
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91855070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGCACC CGGGAAGGGA
  GGGTGGGCGG GGAGGCCTGG AAAGTTCCAC CGGGTTCCAG AGCCCAAGGT TGGTAGGCGC
  GGAGGCGGCG GGGAGCGGGT GCGTGCCGAG CGAGGAGACG GCCTCCGACG GGCTGCTCGA
  GACCGTGTCC ACGCTCCGCA GGCTCGGGGG ACACAGACAC GGCCCGGGAG GGCAAGCAGG
  M
  AGCCGTTGAG GTGCAAGTGC AAGGCGCCCT CCGGGAGAGG GGCGGGGCGG TGCCGGGTGG
  GCGGGGCTCT CGGTGGGCGG GGCGAGCCGT CTGCGCAGCT GCCGGAGCCT TTAAACCCGG
  CCTCGCGGGG TCGCACGGTG CTTTCGCCGT CCGGGAGCTG ACCGGCCGTG TTCCTCTCTC
  GTCTTCCTCT GCGCCCCGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397337299	MGP_WTSI_16_92058427	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	C	C	A	A	A	C	A	A	A	C	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227050771					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	C	C	A	A	A	C	A	A	A	C	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397337299	MGP_WTSI_16_92058427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91855070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8465	CpG island 8465	within coordinates
Gm49711	predicted gene, 49711	134 bp upstream
Mrps6	mitochondrial ribosomal protein S6	154 bp upstream
Rr519574	regulatory region 519574	within coordinates
Rr519575	regulatory region 519575	151 bp proximal
Slc5a3	solute carrier family 5 (inositol transporters), member 3	140 bp upstream
Tssr139459	transcription start site region 139459	96 bp downstream
Tssr139460	transcription start site region 139460	131 bp upstream
Tssr139461	transcription start site region 139461	1968 bp upstream